Systematics and types of classification
The five-kingdom idea of Std 9–10 is studied here in detail: types of classification, categories, naming and the features of each kingdom.
In a big shop goods sit in separate aisles, so we find things fast; classification does the same for organisms.
Systematics is the study of kinds and diversity of organisms and their comparative and evolutionary relationships (G. Simpson, 1961). Taxonomy is classification by rules; the term was introduced by A. P. de Candolle.
In the figure : The figure shows three domains (Archaea, Bacteria, Eukarya) branching from one ancestor.
Rule 1 : Three kinds of classification — Artificial: few easily seen characters (habit, colour) – e.g. Linnaeus. Natural: objectively significant characters – e.g. Bentham and Hooker. Phylogenetic: common evolutionary descent – e.g. Engler and Prantl.
- Easy : Grouping only by height and colour = artificial.
- Medium : Bentham–Hooker belongs to which type? Natural.
- Exam-type (CET) : ‘Based on common descent’ = phylogenetic, e.g. Engler–Prantl.
Rule 2 : Three domains (Carl Woese, 1990) — Archaea, Bacteria, Eukarya. A domain is larger than a kingdom. Archaea and Bacteria are prokaryotic; Eukarya is eukaryotic. All three have unique rRNA.
- Easy : Archaea survive extreme heat, salt and acidity.
- Medium : Archaea differ from Bacteria in cell wall structure.
- Exam-type (CET) : Which is the larger unit, domain or kingdom? Domain.
Taxon = a group of any rank; category = the rank.
Do not mix: Artificial = Linnaeus, Natural = Bentham–Hooker, Phylogenetic = Engler–Prantl. Trap: ‘domain is smaller than kingdom’ is wrong.
Memory clue : "A-N-P: Linnaeus, Bentham, Engler (artificial → natural → phylogenetic)".
Spot the difference
| Type | Basis | Example |
|---|---|---|
| Artificial | Few easy characters | Linnaeus |
| Natural | Significant characters | Bentham and Hooker |
| Phylogenetic | Common descent | Engler and Prantl |
Practice questions
- 1What is systematics?
- 2Who introduced the word taxonomy?
- 3Name the three domains.
- 4Who proposed three domains and when?
- 5Give an example and basis of artificial classification.
- 6Why are Archaea and Bacteria different though both prokaryotic?
- 7Differentiate taxon and category.
- 8How is phylogenetic classification different from natural?
Show answers (try them yourself first)
- 1Study of kinds, diversity and evolutionary relationships of organisms.
- 2A. P. de Candolle.
- 3Archaea, Bacteria, Eukarya.
- 4Carl Woese, 1990.
- 5Linnaeus; few easily seen characters.
- 6Their cell-wall structure differs; Archaea live in extreme conditions.
- 7Category = rank; taxon = an actual group at that rank (e.g. Malvaceae).
- 8It is based on common evolutionary descent, not just significant characters.
Modern approaches in taxonomy
A supermarket barcode instantly names a product; likewise an organism can be identified from its DNA ‘barcode’.
Chemotaxonomy classifies by chemical constituents. DNA barcoding identifies a species from its DNA sequence in a tiny tissue sample. Numerical taxonomy quantifies characters and classifies by algorithm.
In the figure : Three modern methods and the two steps of DNA barcoding; uses below.
Rule 1 : Chemotaxonomy — Cell-wall chemistry: Archaea lack peptidoglycan, bacteria have it; fungi = chitin; plants = cellulose.
- Easy : Fungal cell wall is made of? Chitin.
- Medium : Chemical reason to separate plants and fungi: cellulose versus chitin.
- Exam-type (CET) : Which group has a wall without peptidoglycan? Archaea.
Rule 2 : DNA barcoding and numerical taxonomy — Step (a) collect barcode data of known species; (b) match the unknown sample's sequence with the library. Numerical taxonomy: R. Sokal and P. Sneath, 1963.
- Easy : Two steps of barcoding? Collect data, then match.
- Medium : Uses: endangered-species protection, pest control, vector identification, medicinal plant identification.
- Exam-type (CET) : Cluster analysis is used in which method? Numerical taxonomy.
Rule 3 : Cladogram and phylogeny — Cladogram = branching diagram comparing organisms and their common ancestors. Phylogeny = evolutionary relationship; Woese's three-domain and Whittaker's five-kingdom systems are examples.
- Easy : The three-domain diagram is a cladogram.
- Medium : Besides morphology, phylogeny considers? Evolutionary relationships.
- Exam-type (CET) : ‘A diagram of hypothetical relationship’ = cladogram.
DNA barcoding = DNA sequence from tiny tissue; numerical = algorithm.
‘Linnaeus founded numerical taxonomy’ is wrong; Sokal and Sneath (1963). Trap: swapping chitin and cellulose.
Memory clue : "Barcode = Collect + Compare".
Spot the difference
| Method | Basis | Example / person |
|---|---|---|
| Chemotaxonomy | Chemical constituents | Peptidoglycan, chitin |
| DNA barcoding | DNA sequence | Species identification |
| Numerical taxonomy | Numerical characters + algorithm | Sokal and Sneath 1963 |
Practice questions
- 1What is chemotaxonomy?
- 2Fungal cell wall component?
- 3State two steps of DNA barcoding.
- 4Who proposed numerical taxonomy?
- 5Give two uses of DNA barcoding.
- 6What is a cladogram?
- 7How would you separate plants and fungi chemically?
- 8Why is phylogeny better than classification based on morphology alone?
Show answers (try them yourself first)
- 1Classification based on chemical constituents.
- 2Chitin.
- 3Collect known data; match unknown sample.
- 4R. Sokal and P. Sneath (1963).
- 5Protecting endangered species; identifying medicinal plants.
- 6A branching pattern showing comparison and common ancestors.
- 7Cell wall: plants = cellulose; fungi = chitin.
- 8It also considers evolutionary relationships and metabolic similarities.
Taxonomic categories and hierarchy
A postal address narrows country → state → district → city → street → house; taxonomic categories form a similar ladder.
Taxonomic hierarchy is the ranked ladder kingdom, division/phylum, class, order, family, genus, species. A taxon is a group of any rank (H. J. Lam, 1948).
In the figure : The figure classifies China rose and cobra in seven obligatory categories.
Rule 1 : Categories and their order — Obligatory: kingdom, division/phylum, class, order, family, genus, species. Facultative: sub-order, sub-family, sub-class, series etc. Common characters decrease as we go up.
- Easy : Smallest category: species.
- Medium : Dog and cat are together in which rank? Order Carnivora (families differ: Canidae, Felidae).
- Exam-type (CET) : Tiger, leopard, lion = one genus Panthera; brinjal and potato = genus Solanum.
Rule 2 : Defining the main categories — Species: organisms that interbreed naturally to give fertile offspring. Genus: closely resembling species that usually do not interbreed. Family: closely related genera (Hibiscus, Gossypium, Sida, Bombax → Malvaceae). Order: related families. Class: related orders. Division: related classes.
- Easy : Horse and ass are different species because their offspring (mule) is sterile.
- Medium : Monkey and dog are in the same class Mammalia but different orders (Primates, Carnivora).
- Exam-type (CET) : Division Angiospermae includes classes Dicotyledonae and Monocotyledonae.
From kingdom to species the groups get smaller; 7 obligatory ranks.
Writing ‘species is the largest rank’ is wrong. Trap: ‘cat and dog in the same family’ is wrong (Felidae vs Canidae).
Memory clue : "King Philip Came Over For Good Soup (Kingdom, Phylum, Class, Order, Family, Genus, Species)".
Spot the difference
| Category | China rose | Cobra |
|---|---|---|
| Kingdom | Plantae | Animalia |
| Order | Malvales | Squamata |
| Family | Malvaceae | Elapidae |
| Genus / species | Hibiscus rosa-sinensis | Naja naja |
Practice questions
- 1What is a taxon?
- 2Smallest obligatory category?
- 3Who defined ‘taxon’?
- 4Name the genus of tiger, lion and leopard.
- 5Which ranks are common to dog and cat?
- 6Name two genera in family Malvaceae.
- 7Why are horse and ass different species?
- 8How do common characters change going up and why?
Show answers (try them yourself first)
- 1A taxonomic group of any rank.
- 2Species.
- 3H. J. Lam (1948).
- 4Panthera.
- 5Kingdom, phylum, class, order (Carnivora); families differ.
- 6Hibiscus, Gossypium (or Sida, Bombax).
- 7Their offspring (mule) is not fertile.
- 8They decrease because groups become larger and more varied.
Nomenclature and the five-kingdom system
A vegetable has a different name in each state, so traders use the scientific name; mango has over 50 Sanskrit names in Ayurveda.
Nomenclature is the scientific naming of organisms. In binomial nomenclature the name has two parts (genus + species); Carl Linnaeus introduced it in ‘Species Plantarum’ (1753).
In the figure : Top: parts of Helianthus annuus L.; below: Whittaker's five kingdoms (1969).
Rule 1 : Rules of binomial nomenclature — Two Latin/Greek words; genus first (capital), species second (small); italics in print, underlined separately by hand; each word 3–13 letters; author's name after it (e.g. Mangifera indica L.).
- Easy : Sunflower: Helianthus annuus – Helianthus = genus, annuus = species.
- Medium : In Mangifera indica L., L. stands for Linnaeus.
- Exam-type (CET) : The pre-2011 ICBN is now ICNAFP (Shenzhen Code): published 26 June 2018 after the 2017 Shenzhen congress.
Rule 2 : Five kingdoms (R. H. Whittaker, 1969) — Monera, Protista, Fungi, Plantae, Animalia. Linnaeus's two kingdoms could not hold bacteria, fungi or Euglena, so five kingdoms came; the system is phylogenetic.
- Easy : Only prokaryotic kingdom among the five: Monera.
- Medium : Euglena belongs to Protista (shows features of both).
- Exam-type (CET) : Viruses and viroids are outside the five kingdoms.
Local names are many and limited; the scientific name is international and unique.
Writing the species word in capital is wrong. Trap: ‘binomial system is Whittaker's’ – wrong; it is Linnaeus's, 1753.
Memory clue : "Genus = Grand (capital), species = small".
Spot the difference
| Point | Common name | Scientific name |
|---|---|---|
| Form | Varies by region | Binomial, Latin |
| Use | Local communication | Universal communication |
| Example | Mango | Mangifera indica L. |
Practice questions
- 1Who introduced binomial nomenclature and in which book?
- 2Which word is the genus in Helianthus annuus?
- 3Who proposed the five-kingdom system?
- 4How is a scientific name written in print?
- 5How many letters should each word have?
- 6Why was the two-kingdom system inadequate?
- 7What is ICBN called now?
- 8Why are scientific names better than common names?
Show answers (try them yourself first)
- 1Linnaeus; ‘Species Plantarum’ (1753).
- 2Helianthus.
- 3R. H. Whittaker (1969).
- 4In italics.
- 53 to 13.
- 6Organisms like bacteria, fungi, Euglena showing characters of both kingdoms did not fit.
- 7ICNAFP (Shenzhen Code).
- 8They are the same everywhere, allowing international communication.
Kingdom Monera
Curd-making germs and stomach-upsetting germs belong to the same kingdom; tiny size, big jobs.
Monera are unicellular prokaryotes with no definite nucleus; DNA is a circular nucleoid, small circular DNA = plasmid; wall of peptidoglycan.
In the figure : Four shapes: coccus (round), bacillus (rod), vibrio (comma), spirillum (spiral); two groups below.
Rule 1 : Features of Monera — No membrane-bound organelles (mitochondria, chloroplast, ER); ribosomes 70S and smaller; reproduction by binary fission/budding, rarely conjugation; a few photo/chemo-autotrophs, most heterotrophs.
- Easy : Bacillus is rod-shaped; coccus is round.
- Medium : Plasmid = small extra-chromosomal DNA.
- Exam-type (CET) : Ribosome size in bacteria? 70S (smaller than eukaryotic).
Rule 2 : Archaebacteria and Eubacteria — Archaebacteria: extremophiles – halophiles (salty), thermophiles (hot), methanogens (gut of cows, biogas); no peptidoglycan. Eubacteria: peptidoglycan wall; autotrophs (Chlorobium, Chromatium) or heterotrophs.
- Easy : Biogas bacteria: methanogens.
- Medium : Lactobacillus curdles milk; Azotobacter fixes nitrogen; Streptomyces makes antibiotics.
- Exam-type (CET) : In cyanobacteria (Nostoc) the heterocyst fixes nitrogen.
Mycoplasma = smallest living forms; no cell wall.
‘Monera have a nucleus’ is wrong. Trap: Mycoplasma has a wall – wrong; hence it resists common antibiotics.
Memory clue : "Coccus = Circle, Bacillus = Bar, Vibrio = comma ‘V’, Spirillum = Spring".
Spot the difference
| Point | Archaebacteria | Eubacteria |
|---|---|---|
| Cell wall | No peptidoglycan | Peptidoglycan present |
| Habitat | Extreme (extremophiles) | Common habitats |
| Example | Methanogens, halophiles | Lactobacillus, Chlorobium |
Practice questions
- 1Name the four shapes of bacteria.
- 2What is a nucleoid?
- 3What is a plasmid?
- 4Who are extremophiles?
- 5Differentiate halophiles and thermophiles.
- 6Give two useful and two harmful roles of bacteria.
- 7Why is Mycoplasma resistant to common antibiotics?
- 8What does a heterocyst do?
Show answers (try them yourself first)
- 1Coccus, bacillus, vibrio, spirillum.
- 2The circular DNA region without a membrane.
- 3Small extra-chromosomal circular DNA.
- 4Archaebacteria that live in extreme conditions.
- 5Halophiles tolerate high salinity; thermophiles tolerate high temperature.
- 6Useful: curdling, nitrogen fixation; harmful: typhoid, cholera, tuberculosis, tetanus.
- 7It lacks a cell wall.
- 8Nitrogen fixation.
Kingdoms Protista and Fungi, lichens
Yeast that raises bread, mould on damp roti and mushrooms after rain are fungi; the tiny pond-water organisms are Protista.
Protista are unicellular eukaryotes linking plants, fungi and animals. Fungi are eukaryotic heterotrophs with extracellular digestion, body of hyphae, chitin wall. A lichen is an alga and a fungus living together.
In the figure : Left: four kinds of Protista; right: four classes of fungi; below: lichen.
Rule 1 : Types of Protista — Plant-like: diatoms (silica shell; diatomaceous earth for polishing/filtration), dinoflagellates (Gonyaulax = red tide). Euglenoids: two flagella, pellicle; autotroph in light, heterotroph in dark. Animal-like: Amoeba (pseudopodia), Trypanosoma (flagella), Paramecium (cilia), Plasmodium (sporozoan, malaria). Fungus-like: Myxomycetes.
- Easy : Amoeba moves by pseudopodia; Paramecium by cilia.
- Medium : Red tide is caused by Gonyaulax (a dinoflagellate).
- Exam-type (CET) : Plasmodium causes malaria; Entamoeba amoebic dysentery; Trypanosoma sleeping sickness.
Rule 2 : Classes of fungi and lichens — Phycomycetes (Mucor, Rhizopus, Albugo), Ascomycetes (Aspergillus, Penicillium, Neurospora, yeast), Basidiomycetes (Agaricus, Puccinia, Ustilago), Deuteromycetes (Alternaria; asexual only). In lichen the phycobiont gives food, the mycobiont gives shelter and water; lichens indicate pollution.
- Easy : Mushroom = Basidiomycetes (Agaricus).
- Medium : Coenocytic hyphae = aseptate multinucleate (Phycomycetes).
- Exam-type (CET) : ‘Imperfect fungi’ are Deuteromycetes (no sexual stage known).
Penicillium = antibiotic; yeast = bakery; Puccinia = plant pathogen.
Do not confuse Plasmodium (parasite) and plasmodium (slime-mould cell mass). Trap: calling Ascomycetes ‘club fungi’ is wrong (sac fungi; club = Basidiomycetes).
Memory clue : "P-A-B-D: Phyco (algal), Asco (sac), Basidio (club), Deutero (imperfect)".
Spot the difference
| Class | Common name | Example |
|---|---|---|
| Phycomycetes | Algal fungi | Mucor, Rhizopus |
| Ascomycetes | Sac fungi | Aspergillus, yeast |
| Basidiomycetes | Club fungi | Agaricus, Puccinia |
| Deuteromycetes | Imperfect fungi | Alternaria |
Practice questions
- 1What type of cells do Protista have?
- 2What is diatomaceous earth?
- 3What causes red tide?
- 4What is the fungal cell wall made of?
- 5How does Euglena nourish itself in two ways?
- 6Give two differences between Phycomycetes and Ascomycetes.
- 7Why are lichens pollution indicators?
- 8Define mycobiont and phycobiont.
Show answers (try them yourself first)
- 1Unicellular eukaryotic.
- 2Deposits of diatom silica shells; used for polishing and filtration.
- 3Gonyaulax (a dinoflagellate).
- 4Chitin.
- 5Photosynthesis in light (autotroph); heterotroph in absence of light.
- 6Phycomycetes: aseptate coenocytic hyphae; Ascomycetes: septate hyphae, sac fungi.
- 7They do not grow in polluted places, so their presence shows clean air.
- 8Mycobiont = fungal partner; phycobiont = algal partner (cyanobacteria/green algae).
Kingdoms Plantae and Animalia, acellular organisms
Leaves make food in sunlight, a cow eats grass, and a cold virus has no cell of its own yet multiplies inside ours – three different worlds.
Plantae: multicellular, chlorophyll, cellulose wall, alternation of generations. Animalia: multicellular heterotrophs, holozoic nutrition, no cell wall or chlorophyll. Acellular organisms: viruses and viroids, outside the five kingdoms.
In the figure : Parts of a bacteriophage; on the right, viroid and prion.
Rule 1 : Kingdoms Plantae and Animalia — Plantae: mostly autotrophs; some insectivorous (Venus fly trap, pitcher plant) and parasitic (Cuscuta). Two groups: Cryptogamae and Phanerogamae. Animalia: multicellular, mostly motile, determinate growth.
- Easy : Cuscuta = a parasitic plant.
- Medium : Plants vs fungi: wall cellulose vs chitin; nutrition autotrophic vs heterotrophic.
- Exam-type (CET) : ‘Extracellular digestion’ belongs to which kingdom? Fungi.
Rule 2 : Viruses and viroids — Virus: protein coat (capsid, capsomeres) + DNA or RNA (never both); inactive outside a host, takes over host machinery inside – an ‘infectious nucleoprotein’. Viroid: only RNA, no coat (Diener, 1971). Prion: abnormally folded protein.
- Easy : Virus infecting bacteria: bacteriophage (usually double-stranded DNA).
- Medium : Pasteur named ‘virus’; Beijerinck called it ‘contagium vivum fluidum’; Stanley crystallised it.
- Exam-type (CET) : An infectious agent with only RNA and no coat: viroid (potato spindle tuber).
A virus has DNA or RNA, never both; a viroid has no protein coat.
‘Viruses are living cells’ is wrong; they are acellular. Trap: ‘TMV has DNA’ is wrong (TMV is an RNA virus).
Memory clue : "Virus = Coat + Core; Viroid = Core only".
Spot the difference
| Point | Virus | Viroid |
|---|---|---|
| Protein coat | Present (capsid) | Absent |
| Genetic material | DNA or RNA | Only RNA (small) |
| Example | TMV, bacteriophage | Potato spindle tuber |
Practice questions
- 1Name the two major groups of Plantae.
- 2Name a parasitic plant.
- 3What type of nutrition do animals have?
- 4What is a capsid?
- 5What is a bacteriophage?
- 6Give two differences between virus and viroid.
- 7Why are viruses called infectious nucleoproteins?
- 8What is a prion and one disease?
Show answers (try them yourself first)
- 1Cryptogamae and Phanerogamae.
- 2Cuscuta.
- 3Heterotrophic, holozoic.
- 4The protein coat of a virus, made of capsomeres.
- 5A virus that infects bacteria.
- 6A virus has a protein coat, a viroid does not; a viroid is only RNA and smaller than a virus.
- 7They are made of protein + nucleic acid and are infectious in a host cell.
- 8An infectious abnormally folded protein; mad cow disease.
Quick revision of the whole lesson
| Concept | Key fact |
|---|---|
| Types | Artificial (Linnaeus), natural (Bentham–Hooker), phylogenetic (Engler–Prantl) |
| Three domains | Archaea, Bacteria, Eukarya – Woese 1990 |
| Modern methods | Chemotaxonomy; DNA barcoding; numerical (Sokal–Sneath 1963) |
| Hierarchy | Kingdom → Division → Class → Order → Family → Genus → Species |
| Naming | Binomial; Linnaeus 1753; ICNAFP 2018 |
| Five kingdoms | Whittaker 1969: Monera, Protista, Fungi, Plantae, Animalia |
| Monera | Shapes: coccus, bacillus, vibrio, spirillum |
| Fungi | Phyco-, Asco-, Basidio-, Deuteromycetes; chitin |
| Virus / viroid | Virus = coat + DNA/RNA; viroid = RNA only (Diener 1971) |
🎯 Most important points for the exam
- Three kinds of classification and their founders.
- Three domains and five kingdoms (years and scientists).
- Rules of binomial naming (genus capital, species small, italics).
- The seven steps of the hierarchy.
- Archaebacteria vs eubacteria; bacterial shapes.
- Four classes of fungi; lichen = alga + fungus.
- Virus, viroid and prion differences.
Understand the concept → draw the figure → memorise the key points → solve questions yourself.